Tracking progress towards zero cases: estimating malaria reproduction numbers and their spatiotemporal variation in elimination settings
Please arrive 5 minutes before talk is due to start to gain access to the building
In 2016, the World Health Organization identified 21 countries which could eliminate malaria by 2020. Monitoring progress towards this goal requires tracking ongoing transmission. In addition, understanding the spatio-temporal pattern underlying declines in malaria transmission can inform efforts to maintain elimination and prevent re-introduction. However, traditional methods to measure malaria transmission such as parasite prevalence or the entomological inoculation rate are not suitable in near-elimination settings due to cases being sparse and highly focal in space and time.

I will present approaches which apply Bayesian network analysis to individual level case data from two elimination settings, El Salvador and China. Using this approach, we estimate the likelihood of connectivity between observed cases and derive individual reproduction numbers as well as their variation through time and space. Individual reproduction numbers, R_c, describe the state of transmission at a point in time and differ from mean reproduction numbers, which are averages of the number of people infected by a typical case. We also jointly estimate the number of likely unobserved sources of infection. We use these estimates within spatio-temporal geostatistical models and carry out time series analysis to map how transmission varied over space and time and to provide estimates of the timeline to elimination and the risk of resurgence.
Date: 8 July 2019, 14:00 (Monday, 11th week, Trinity 2019)
Venue: Medawar Building, off South Parks Road OX1 3SY
Venue Details: Level 30 Seminar room
Speaker: Isobel Routledge (MRC Centre for Global Infectious Disease Analysis, Imperial College London)
Organiser: Moritz Kraemer (Department of Zoology, University of Oxford)
Organiser contact email address: suki.kenth@zoo.ox.ac.uk
Host: Dr Moritz Kraemer (Department of Zoology, University of Oxford)
Booking required?: Not required
Audience: Members of the University only
Editor: Suki Kenth